MmuEX1016535 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84807171-84808444:-
Coord C1 exon
chr12:84808425-84808444
Coord A exon
chr12:84807286-84808103
Coord C2 exon
chr12:84807171-84807210
Length
818 bp
Sequences
Splice sites
3' ss Seq
TATCTCAAACCATTTCACAGAGG
3' ss Score
4.66
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGACTCTCGGGCTGTTCAG
Seq A exon
AGGAAAAAGCATCTGGCCCTCTTCCCTGGTCCCGGGATGCCCGTGGGCATCCAAGACTGAGCATCTCCCAGCGCCTCCAGAAGACTGAATCTGCTTTCTCCTTCTCCAGTCTGCTGGTCCCCGCTCATCTCCTGCTAAGCTGTCTCCGTGCACGGCTTCTCCAGCAACCTTGCTTTCCTGCTTAAGAATTGTGTGCTGAAACAGAGTGTGGGGCCCCACACCTTTAAACCCAGTACCTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTAGAGGCCAGCCTGGTCTACAGAGTGAGTCCCAGGACAGCCAGGGCTACGCGGAGAAACCGCCATCTCAGAAACAAAAGAGAACAAAACAAAAAGCAGGCAAACAAACAAACGAAGGAACCCAGTGCTGTCCCAGATCCAAGCTTCTGCTATCCGTCTTCACAGTCCCAGCAATGTCCCAGTGCCCTATTCTGTCCTCTGGCATTCCTCTTTGCTTCCTGTGCCCCATCTGTCTCTATCCATCGCTGTGGCGAGCAACACCAAGTGTAGCTATGACTCTTGGCTTCGACACACTGGCTTTGTGGCCCAGGGTGAGCTAGTTAATCTGCTACTCCATCTGTAACGTGAGGATCGTAGCCTTGATATGTGCTAATGTTCCACTGTGCGCTGTGCGGGGCCGACACTGTGCTGGTACCAGACTCGCATTTAACCGCTGTCACTGATAAGGGAGTGTCGCTGATCAGTTAAGATTGGGGATAGAAAATGCCTAGAGACATACACGCCAGCGGCAAAAACTCACTTGCTGAGAGAGTTGAACAGGAAGGAGATGGG
Seq C2 exon
ATCACAACCAGTGCTCCCCACCTACCTGCCCGGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'17-18,'17-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000002073fB12385
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types