MmuEX1016542 @ mm10
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27330127-27334946:-
Coord C1 exon
chr7:27334837-27334946
Coord A exon
chr7:27333355-27334216
Coord C2 exon
chr7:27330127-27330318
Length
862 bp
Sequences
Splice sites
3' ss Seq
ATTCTGACCTCTCCCACCAGGTG
3' ss Score
10.81
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTTGCAGGAGGCCCGAGCTCTGCTGAGGCAAAGGCGGCCCCGAGGGCCGTGGGCCCGGGCATTGCTGAAAAGAAGGCCCCCACATCGCGCCCCTGCCGGCCAGGCCCGGG
Seq A exon
GTGTAGAGAGTCTTGGTGTGCTGTGGCGTCTTCAGGTGTAAGCGCCTTAGTCTCCTCTCCAGAATTCAGCTCCTCTAATTCCTTTATGTGTCCTGTACACCGACCCTTCTCGTCACCCACAGATGTACCATCTTGCTGCCCAAATGTGCCATCCTTGTCCTCTATCTAGATGAAGCCTCTTCCCCCCCACCCCCTACCCCCGTGCCTGGTCAGAGGATCAGTCTTCAGCTGGCTCCCCAAATGCGGCCCCCATTACTCTAATGGATTTCCTCTCAATGGATTCAACTCTCTCTGGGAGCAAACCCGCCCGCCCCCACCTGTTCCCTTCCCTGCTACTCCCCATAGGCCCCATCCACTTGTTGGAGCACGGGTGGGAGCAGAGGGGGCGCCCTCCCCTCCCCCCTGCGAGTCTAGCGCCCAGCCTTCGCGCCTCTGGCTAAGCGCCCAGCCCCACGCGCCCCCGCGCGGCCGCCCGGGAGGGAGCGATGGGGAGGGGGGGCTGAGCGGGGGCGCGGCCGCCCTCCCCCGCGGGCGGGCGGGCGAGCGGGCGGGCGCGGCCGGGCCCCTCGGGCGGGCTGGGGCGGCGGCGCGGTGGAGCGCGGCGCTGCAGCCATGGCGGGCGGCGCGCAGCTGCTCTGGGTGTCGCTATTGGTGCTGCTGGCGCAGCTGGGGCCGCAGCCCGTACTGGGCCGACCCCGAGAGCGTCTTCGCGTGCGCTTCACCCCCGCTGTGTGCGGCCTGCGTTGCATCCACGGGCCCACTGGCTCCCGCTGTACCCCGACCTGCGCGCCCCGCAACGCCACCAGCGTGGACAGCGGCGCGCCCGGCGGGGCGGCCCCGGGGGGACCCGGCTTCCGCGCCT
Seq C2 exon
TCCTATGTCCCTTGATCTGTCACAACGGTGGTGTGTGTGTGAAGCCTGATCGCTGCCTTTGCCCCCCGGACTTCGCTGGCAAATTCTGCCAATTGCATTCTTCGGGGGCCCGGCCCCCGGCCCCAGCCATGCCGGGCCTTACCCGCTCCGTTTATACAATGCCACTAGCCAACCACCGCGATGATGAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=0.146 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=43.1)
Main Inclusion Isoform:
ENSMUST00000038618fB12387
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGGAGGCCCGAGC
R:
CGTGTTCATCATCGCGGTGG
Band lengths:
302-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types