MmuEX1016731 @ mm10
Exon Skipping
Gene
ENSMUSG00000002948 | Map2k7
Description
mitogen-activated protein kinase kinase 7 [Source:MGI Symbol;Acc:MGI:1346871]
Coordinates
chr8:4238740-4243445:+
Coord C1 exon
chr8:4238740-4239033
Coord A exon
chr8:4240175-4240289
Coord C2 exon
chr8:4243304-4243445
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGCCTGACTGACCTTCACAGCTT
3' ss Score
4.96
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
AGTGCGCACGCGCGGCGTTATGCACGCGAGGCAGGGCGGGCACGCGCTGGGGTGGTCTAGGCAGGACGGCGGCTCGGCGGGGTCATCCGAGCGCAGGCGCAGTGCGGTGTTTGTCTACCCCGGACTGACGGGTGGCCTGGCGGTGAGCGGCGGCAGCGGCGGCGGGGAAGATGGCGGCGTCCTCCCTGGAGCAGAAGCTGTCCCGCCTGGAAGCCAAGCTGAAGCAGGAGAACCGTGAGGCCCGCAGGAGGATCGACCTCAACTTGGATATCAGCCCACAGCGGCCCAGGCCCA
Seq A exon
CTTGATCATCTTCCTGAAGAGGCATTCAGGATTCCCTCCATCCCTACCCCTTCTGGACAAAGTCTTCCACGTTTCCTTCCTGGGAGTTTCTTCCAGGAACTGGAGATACCCAGAG
Seq C2 exon
CCCTGCAACTCCCACTGGCCAACGATGGGGGCAGCCGCTCACCATCCTCAGAGAGCTCCCCACAGCACCCTACACCCCCCACCCGGCCCCGCCACATGCTGGGGCTCCCATCAACCTTGTTCACACCGCGCAGTATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002948_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=1.000 C2=0.723
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000110998fB12503
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGTCTACCCCGGACTGA
R:
AGCTCTCTGAGGATGGTGAGC
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types