MmuEX1016834 @ mm10
Exon Skipping
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60236754-60241052:+
Coord C1 exon
chr2:60236754-60236926
Coord A exon
chr2:60237531-60237817
Coord C2 exon
chr2:60240943-60241052
Length
287 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTAATTTTCCAAGTTA
3' ss Score
4.98
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCTCCTTTTAGAGGACTCTGATGATGAAGAAGAAGGGGACTTATGTAGAATTTGTCAGATGGCAGCAGCGTCATCATCTAATTTATTGATAGAGCCGTGCAAATGCACAGGGAGCCTGCAGTACGTCCATCAAGAGTGTATGAAAAAGTGGTTACAAGCCAAAATTAATTCTG
Seq A exon
TTAGTTACTTTGTGTAAACTCGGCTGTCCTGAAGCTCTTTGTAGACCAGGCTGACTTCAAACTCACAGAGATCAGGCTGCCTCTGTATCCCAAGTGCCTGGGACTGAAGGTGTGCACTACCACCTGGCTGAAATGATCTTATTTGATGGTTGCTCTGGAGAATAGGCTTCAGGGGAAGACCAGACCTGTAGCCCGGAAACTAAGCATAATCTAGTCTCAAAGCACTTGCTGGAGTAGGTGATTGATAATTTCTCATGGAAATGGGATGATATAGGTATGTTTTAGAG
Seq C2 exon
GCTCTTCATTAGAGGCTGTGACTACCTGTGAACTCTGTAAAGAGAAGTTGCAACTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977_MULTIEX1-6/8=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129062=RINGv=PU(76.8=72.9)
A:
PF129062=RINGv=PD(0.1=0.0)
C2:
PF129062=RINGv=PD(21.4=32.4)
Main Inclusion Isoform:
ENSMUST00000102747fB12572
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGGACTCTGATGATGAAGAAGA
R:
TTGTTCATTTGCATGAGCTCTATGT
Band lengths:
276-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types