MmuEX1016898 @ mm10
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:48949508-49021440:+
Coord C1 exon
chr2:48949508-48949549
Coord A exon
chr2:48950139-48950175
Coord C2 exon
chr2:49018254-49021440
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTCATCCTCCACAGCTC
3' ss Score
10.26
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCCTTCCACCAACCAGCCTCCCGTCAGAACGGGACATGCGCA
Seq A exon
CTCCAGGGAAGGCACTCAAAAGTGGGGGGCAGGAAAG
Seq C2 exon
ATAACTTCTACAAGAACCTGTGTATCGGATCCTAACTAAATCAAAATGTTTGAAATCAGAAGATCATGATCGGTGAGTGGCATTTCTCAATTTACTGTTTTCTGGATGTGACAGTGTAGAAAGAATGTCTGGGTTGTTGGTATAGTATATTGACATGGTTACTGGATTCCAGTGTTTTGAATAGGAGGAAAAAATTATGAGAATGGTTCAGAGATTTCTAAGTTTAAAAGATGAGAAAGAATGTTTGAAGAAATTATCTGGAAGATGACAGGAAGAAAAATAGGGAGATAGGACTCTGGAAACAAAACAAAACAAAATGTAGCTTCCACTCCATGACTATTTATTTATTTATTTATTTTATTTAATCAGTTGGATTAGATACAGTTAATAGTGAGAGAGCTTCATAACTCAAAGTGTTTCTTAACATTATTTGATCGCAGGTAATTCATCTGAATAAATAGATTTTCATCTCTTGTTAACCCTTAAAAATGGTTTCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792_MULTIEX1-1/14=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGCCTCCCGTCAGAA
R:
TGCCACTCACCGATCATGATC
Band lengths:
115-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types