MmuEX1017262 @ mm10
Exon Skipping
Gene
ENSMUSG00000054005 | Mill1
Description
MHC I like leukocyte 1 [Source:MGI Symbol;Acc:MGI:2179988]
Coordinates
chr7:18245347-18255972:+
Coord C1 exon
chr7:18245347-18245700
Coord A exon
chr7:18255417-18255507
Coord C2 exon
chr7:18255886-18255972
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCCATGCCCCCTGCCTAAGGAC
3' ss Score
3.61
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCATTTGAATCAGGGCTGCCTGAGCCCAAAGCATCCTGAGCACCTCTGTGTTTCTCAGCTTCTCTGTACAGGGACCAGCAGCCCTCCAGCCAGCCCAGACACTTTCAGGATCCCCTTTCAGCCTCTTAGGATCCCCCTCCACCTGAAGTCCCAGTGATACCCTTAAGTTCTCCTTGGATTCCTGAGGTTGGTAGAGCTAGTAAGAGGAGCTCATCTGGCTTGGGATCTTCAAAGTAAACTCAGAAGTCTCAGGCAGAGAGAAGATGCTGCTGTCCAGGAACCTCAGAGCCCTAGCTGCGATCCACCTGTGGATAGTGTACCTGCTCCTGGAGGATTTACTGGGCACCTGCGCAG
Seq A exon
GACCTGGATGTAGAATTCTCAACTCCAGCATCACGTCTGCCTGCTTCATGCCATGCTTCCTGCCATGATACAATGCACTAACTCAAAAACT
Seq C2 exon
AGGGTGACAACCAAAGACTGGTGGCTTCTGCTCCCTACCAAGATATTGAGATCACTCTGGAGAAGCCTAGAGTACAGGCGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054005_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0012913=MHC_I=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000066780fB12868
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATGCTGCTGTCCAGGA
R:
CCGCCTGTACTCTAGGCTTCT
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types