MmuEX1017894 @ mm10
Exon Skipping
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67219894-67220998:+
Coord C1 exon
chr11:67219894-67220018
Coord A exon
chr11:67220402-67220710
Coord C2 exon
chr11:67220795-67220998
Length
309 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTGCTGTCCTGAAGGCA
3' ss Score
5.36
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTCACTGAACAGATTGCAGAAGGAGGGAAACGCATCCATGAACTGGAGAAAATAAAGAAGCAAATTGAGCAGGAAAAATCTGAGCTCCAGGCTGCTTTAGAGGAAGCAGAG
Seq A exon
GCATCTCTGGAGCACGAGGAGGGAAAAATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTAGAGTCGTGGAGTCCATGCAGAGCACGCTGGATGCTGAGATTAGGAGCAGGAATGACGCCATCAGGCTCAAGAAGAAGATGGAGGGAGACCTGAACGAGATGGAAATCCAGCTGAACCACTCCAACCGCATGGCTGCCGAGGCCCTGAGAAACTATAGGAACACACAAGGCATCCTCAAG
Seq C2 exon
GACACTCAGCTGCACCTGGACGATGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACCCTGGAGCAGACGGAGAGGAGCAGGAAGATTGCAGAGCAGGAGTTGCTGGATGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-'40-36,'40-35,41-36
Average complexity
S
Mappability confidence:
100%=50=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.301 C2=0.353
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(14.2=100),PF045827=Reo_sigmaC=PD(23.8=81.0)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.7=30.1)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTTCTGACCTCACTGAACA
R:
CTGGGTGTGGAGGAGCTGC
Band lengths:
328-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types