MmuEX1017909 @ mm10
Exon Skipping
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67094955-67096127:+
Coord C1 exon
chr11:67094955-67095081
Coord A exon
chr11:67095875-67095883
Coord C2 exon
chr11:67096009-67096127
Length
9 bp
Sequences
Splice sites
3' ss Seq
GATACACCCCTACTCTCAAGAGG
3' ss Score
-0.06
5' ss Seq
GGGGTCTCT
5' ss Score
-7.72
Exon sequences
Seq C1 exon
GCCAATCTGGAGAAGATCTGCCGAACTCTAGAGGATCAGTTAAGTGAGGCCAGGGGCAAGAATGAGGAGATGCAGAGGAGCCTAAGTGAGCTGACCACACAGAAGTCCCGGCTGCAGACAGAGGCGG
Seq A exon
AGGAGGGGG
Seq C2 exon
GTGAGCTGAGTCGTCAACTAGAAGAAAAGGAAAGCATTGTATCTCAGCTCTCCAGGAGCAAGCAGGCCTTTACCCAACAGATAGAGGAGCTCAAGAGGCAACTGGAGGAAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908-'39-35,'39-34,40-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(15.4=100),PF0157614=Myosin_tail_1=FE(12.8=100),PF104734=CENP-F_leu_zip=FE(30.4=100),PF059116=DUF869=PU(35.5=90.7)
A:
PF0157614=Myosin_tail_1=FE(0.3=100)
C2:
PF0003816=Filament=PD(0.4=2.5),PF0157614=Myosin_tail_1=FE(11.9=100),PF104734=CENP-F_leu_zip=PD(26.1=90.0),PF059116=DUF869=FE(35.5=100)
Main Inclusion Isoform:
ENSMUST00000108689fB13228
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAAGTGAGCTGACCACAC
R:
CCTGGAGAGCTGAGATACAATGC
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types