MmuEX1017922 @ mm10
Exon Skipping
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54946618-54947222:-
Coord C1 exon
chr14:54947112-54947222
Coord A exon
chr14:54946914-54947072
Coord C2 exon
chr14:54946618-54946682
Length
159 bp
Sequences
Splice sites
3' ss Seq
GGATGGTGGACTCCCTGCAGACC
3' ss Score
4.84
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCCTCCCTGGAGCACGAGGAGGGCAAGATCCTCCGTGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATCGAAAGGAAGCTGGCAGAGAAGGATGAGGAGATGGAGCAG
Seq A exon
ACCTCCCTGGATGCGGAGACACGCAGCCGCAATGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGCGACCTCAACGAGATGGAGATCCAGCTCAGCCAGGCCAATAGAATAGCCTCAGAGGCACAGAAACACCTGAAGAATTCTCAAGCTCACTTGAAG
Seq C2 exon
GCACGAGGAACAGTGCACTCTGGACCAGTCGAGCCTCAGGACAAGAGAGTAAGATAATGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-'60-66,'60-65,61-66
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.767 C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGAGCACGAGGAG
R:
TTCATTATCTTACTCTCTTGTCCTGA
Band lengths:
170-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types