MmuEX1017996 @ mm10
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70126847-70189608:+
Coord C1 exon
chr2:70126847-70126992
Coord A exon
chr2:70182575-70183082
Coord C2 exon
chr2:70189543-70189608
Length
508 bp
Sequences
Splice sites
3' ss Seq
CATGTTCTCTTCCGCTGCAGCAT
3' ss Score
9.54
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTCATTGCTTGCGAGCAGCAGTATGACTCGTCCTATGACGCTCGTTGTGACGTCTGGTCCTTGGGCATCACAGCCATTGAGCTGGGAGATGGAGACCCTCCCCTCTTTGAAATGCATCCTGTGAAAATGCTCTTTAAGATACCAAG
Seq A exon
CATTTAGGAGATGGAGGAGGGAAGATCAGAAGCCCAAGGTCAGCCTTGGCTACACAAGGACCTGAGGCCAGCCTGGCGCACAGGAGAACTTGTAAAGCTAATAAGGTCTATTAGAATCAGCGTGGCACAGAGGCACATGCCTGAAGTCCCAGCACTTAGATGATCAAGCTCCAGGCCAACAAGGCAACAGAGGAAGACTCAAACCCCATCATCTCCCCTGCGAAAGAGAGAAAAGTGAAAGAACAGACAAGCTTGAAACTTCAGAAATACCCACCCTTATCGCCTTCCTCAGTTTGAACTATTATTGTGGAAGAAATTGTCATTGATATTAACCATAAAACTTGTACTTAGGCAGTGGTGGTCTACAAGCGACATGGCTCTGGTGCCTTTTGTCCCCACTTCCTTCCAGAAGCCCTCCCACCTGGTGTGCTTGCAAACAGCTTCTGTCTTCCTCCCCTGTTTTCCCTGAGGAATAGAAGTGATAATGGAGTCTTTCTAATGGCTACAG
Seq C2 exon
AAACCCTCCACCCACTTTGCTGCACCCTGACAGCTGGTGTGAGGAATTTAACCACTTCATTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.0=100)
A:
PF0006920=Pkinase=PD(0.4=33.3)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
ENSMUST00000060208fB13269
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAGTATGACTCGTCCT
R:
TGTGAAATGAAGTGGTTAAATTCCT
Band lengths:
199-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types