MmuEX1017999 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74653930-74661729:+
Coord C1 exon
chr18:74653930-74654070
Coord A exon
chr18:74657382-74658058
Coord C2 exon
chr18:74661607-74661729
Length
677 bp
Sequences
Splice sites
3' ss Seq
CCTTTACCCCCTTGTTTCAGACC
3' ss Score
9.32
5' ss Seq
GCCGTCCTT
5' ss Score
-12.35
Exon sequences
Seq C1 exon
CATGTGTTCAAGCTGGAGCAAGAAGAATATATGAAGGAGCAGATCCCGTGGACTTTGATTGACTTCTACGATAACCAACCGTGTATAGACCTCATAGAGGCAAAGCTGGGCATCCTGGACCTGTTGGATGAGGAGTGTAAG
Seq A exon
ACCCTCTGAGAAAGAATACTGAAGTGGCACTGAAGAGTTGAGTTCTGTGACCTCCATGCAAGAACACACAAAGCCAAATGAGGACCGAGCTAAGGGTGTGAAGCAGCCAAGGGAAATCACGTTCAATCACCGTCCTGGAGATGTTGAAGACAGCAGCTCGTAGCTGCTGCTTTTCATTTGGAAGTGTAGACGTGGCCTTGAGAGGATTCTTCTCCATTGTGAGGGAGGCCAGGAGCTAGGAGGAGTTGGAGAGGAGACACATCATTAAAACAATTTGGTTCCTTCGGGGGGTGCGGGGGGAGCATCTGCAGTCAGATCTAGTCACGACCTTCTGCTCAACACTCAGGAGGCAGAGTCAGTTCAAGACTGACCTGATCCACATAGTTTTAGGCCAACCAGAGCTACCTTATCTCAAAAACAACAACAACAACAACAAACAAACAAACAGACAGACAAACAGAGAAAAAGAAAACACAGAGATAGGAGGATGAAGAGGAAGAGGAGGAGGTGGTGGTGGTGGGAGAGGAGGTAGTAGTTAGTGGTTATAGCACTTCTTCAGGACAGCGGCCTGGGGATGCTTTGGTGCAACGATGACTTGTGTGTTTTCAGGGGATAGATGGGAGGGCACAGGGAGGTGTAGGATGGGACAAGATAACGTATAAGTAACCAAGAAAGCC
Seq C2 exon
GTCCCCAAAGGAACTGATCAGAACTGGGCCCAGAAACTCTACGAACGACACTCCAACAGCCAGCACTTCCAGAAACCACGCATGTCCAACACGGCCTTCATTGTCAACCACTTTGCAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'35-26,'35-25,36-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.3=100)
A:
PF0006316=Myosin_head=PD(0.2=33.3)
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Inclusion Isoform:
ENSMUST00000121875fB13271
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCAAGCTGGAGCAAGA
R:
CTTATCTGCAAAGTGGTTGACAA
Band lengths:
262-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types