MmuEX1018005 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75232020-75242872:+
Coord C1 exon
chr9:75232020-75232175
Coord A exon
chr9:75232423-75232711
Coord C2 exon
chr9:75242762-75242872
Length
289 bp
Sequences
Splice sites
3' ss Seq
CCAGCGTTGTAACCTTCCAGGCC
3' ss Score
6.32
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
AGTCCGGGCGCCAGAGCCCTCGGGGGAAGGGAGCCGTGGCACTCGGGAAAACTTCTGCACAAGATGGCCAGGCGCTGAGTGCCTGGGCGCGCACAGTCCCCTGCAGCAACAGCAGCAGAGAGGAGGTCCATGGCGGTGGCCGAGCTCTACGCGCAG
Seq A exon
GCCCTCGGAGTCTGGAGGACTCCGGCAAGATTGGCGGTGTTTTCTAGAATGCTGGTGCGCTTCCCTGTGCAGGCGAAGGAAGACACTCGGGGGATCCACCTGGAGTTGCCCGGTCTGAGCACAGGAACCAGCAGCCCAGAGTCCCAGGCCCCGGGTGCTGTTGGGCTCTTTTTAACCAGTGTAAGGGTGCATTAACTCAGAGAGCACCTCAGACAGGCCTGACCGGGAGCACATGCATTCTGGAAAACTTCCAGAAGCGAAGAGCTTCATCCTCACCCAGGAAAAAAAT
Seq C2 exon
TACAACAGGGTTTGGATCCCAGATCCTGAGGAAGTTTGGAAGTCGGCTGAAATCGCAAAGGACTACAGAGCGGGTGACCGAGTCCTCAGACTTCTGCTGGAGGATGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGAGCCGTGGCACTC
R:
CATGCCATCCTCCAGCAGAAG
Band lengths:
242-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types