MmuEX1019319 @ mm10
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119304805-119322427:-
Coord C1 exon
chr9:119322257-119322427
Coord A exon
chr9:119322005-119322127
Coord C2 exon
chr9:119304805-119304917
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGGGGAGGCGCGCGGCGAGGTG
3' ss Score
-7.8
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTGTCGGCAGGTGGAGGGAGAAGGGAAAGTTTGGCCCGTGCTTGGGGTTCGGGTGGAGGGCGGGACGGAGGGGCAGGGCTGGGTAGAAGCTTGTTTCGCGGTGCCGCGGAGGTTAAGGCCGGCTCGTGGGCTGGGCCGGGGACTGCGGGACGCGGAGCCGCGGGAGGCGAG
Seq A exon
GTGACCTGAGAGCCCGGAGCGTGAGGAGCACGGAGCCAGGCGCTGCAGCCGTCATGTCCGAGGACTCGAGCGCCCTGCCCTGGTCCATCAACAGGGACGACTACGAGCTGCAGGAGGTGATAG
Seq C2 exon
GGAGTGGAGCAACTGCCGTGGTCCAAGCAGCTTACTGTGCCCCCAAAAAGGAGAGAGTGGCGATCAAGCGGATAAACCTGGAGAAGTGTCAGACCAGCATGGATGAGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(2.5=29.2)
A:
PF0006920=Pkinase=PU(2.5=29.2)
C2:
PF0006920=Pkinase=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGAGGGAGAAGGGAAA
R:
GGTTTATCCGCTTGATCGCCA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types