MmuEX1019463 @ mm10
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56641255-56648949:+
Coord C1 exon
chr14:56641255-56641317
Coord A exon
chr14:56646657-56646884
Coord C2 exon
chr14:56647174-56648949
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTGTTCTTCTAGTGG
3' ss Score
10.03
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
ACAGAGATTGATTCTTCGAGACTAAAGCACAATAAACTCTCTGATGGCCATGGAGTGCTACAG
Seq A exon
TGGTGTCCATGAGTGAAGCAGAGACCAGAGTCGGGTGTGCTCATACAAGGGAGACACCCATCACTTAGCATTATGCCTGGCCCTTGAACTGCTGTTGTTGTTGTTTGTTGTTGTTTTGAGATGGTTTCTCTATGTAGCTCTGGCTGTCCTGGAACTTGCTCTGTACATCATGCTGGACTCAAATCCAAGAGAGTTGCCTACCTCTGCCTCCTGAGTACAGCACTGAAG
Seq C2 exon
CCCGTTTCCGTCTCCTCTGAAGTGAATGAGAAACCATCACTGCTACTCGCTGCTAAAAAAAGGAAAATAAAGACTATAAAGAAGTGCAGTCTAGACATTTCTGAAGATTTTGAAGACAGGACTGCAGTAGCACAGTCACCTGCAACAGCGCAGTCTCTTAATTTCCACCTGCCTCTCAGTGTCCGCCCACAACTGAAAGCTGTGGAGCAGCAGCTGCATGGGAACCGGCTGGAGCCAAAGCAAAGGGGAGGATTTCGAAAACTGCTCATGGCAAAGAAGTGTCGAAATGTGCCTGATTCCCTGGTTTCCTCTGCTCCTGCAGTCACAGCTGAGTTTTCTTACCTTTCTGCCTGCAGCTCTAGTTCTGCCTTCCTGTCTCCTCTCTGCGACATCCCTTCTTCTCTTCCTCCCCATCCCCTTGGTGGTACCCACCCTCCTCCCCCTCTTCCTCTCCCTGATGGCACCCATCTTCCTTCCCCTCTCTTTGGTAGCACCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF063467=Drf_FH1=WD(100=22.1),PF063467=Drf_FH1=WD(100=26.2)
Main Inclusion Isoform:
ENSMUST00000161553fB14218
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGGCCATGGAGTGCTA
R:
CGACACTTCTTTGCCATGAGC
Band lengths:
308-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types