MmuEX1019630 @ mm10
Exon Skipping
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:75989912-76017919:-
Coord C1 exon
chr2:76017836-76017919
Coord A exon
chr2:75993514-75993643
Coord C2 exon
chr2:75989912-75991287
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCATTCCATTCTTTACCCAGAGC
3' ss Score
7
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCTATTTTTGACCGGAACCGGAAAGATGAACTGCCTCGGTTGCAGCTGGAGTGGATTGATAGCATCTGCATGCCTTTGTATCAG
Seq A exon
AGCATCGGCAGCAACATCCGTGGTCCTGAGTTTCTCACAGAAAGCACAGAGCTTGCATTCTTTGTCTACTTGAATGAGTCCCTGACAACTGGTGGCTGGGAAGGGGATAGTCTACTTCTGTTCTTTGCAG
Seq C2 exon
GCCTTGGTGAAGGTCAATGCAAAACTGAAACCAATGCTGGATTCAGTGGCTGCCAACCGAAGGAAGTGGGAAGAGTTGCACCAAAAAAGACTACAGGTCTCGGCTGCCTCCCCAGACCCTGCCAGTCCCATGGTGGCCGGGGAAGACAGACTGTAAACCACCCAGAGCCGCTGCGCCACCCTGTGGTCGGGAGGGTCCTCCGCATCCTGAACTACTTGCTTTGGTTGAACCGCAACATCCTATTGGTTCAGCTCGGATAGTCAGTCCCAAAGCTTTGATTGTATCAGGAAGCACCCAAGAAAGTGTCGTTGGCAGCAGAGGCACGAAAGATGGAGTGGGACAGAGAATATGACCCTCAACTTTCCATCCTGAACCCATACTGCTGGATTTGGATCCATGGACCTGAGGGCCATCAGCCCCACTCCTGCTGAGCTGAGAGGACACCGTGGTAAAAGTGTCACTATGGCTGCTTCCTGTATGGTACTTTTCTGTTATGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.294
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.2=100)
A:
PF0023314=PDEase_I=PD(5.6=29.5)
C2:
PF0023314=PDEase_I=PD(7.9=36.5)
Main Inclusion Isoform:
ENSMUST00000099992fB14335
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGGAGTGGATTGATAGC
R:
TAGTTCAGGATGCGGAGGACC
Band lengths:
257-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types