MmuEX1020064 @ mm10
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139935982-139957831:+
Coord C1 exon
chr6:139935982-139936076
Coord A exon
chr6:139942193-139942404
Coord C2 exon
chr6:139957706-139957831
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCCCTGTGATACAGTGT
3' ss Score
5.94
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTGAGAACTCTCTAGACAAGAGCCCTAAGGTGCAGTTACTGATGACGTATGAGGACTCGAGGCTCACCATCCTAGTGAAACACTTGAAAAACATC
Seq A exon
TGTAAATATTCCCAGACCTTCAAAGTTACCATGACCAAGAAGCCAGCGTTTCTGAATCTCATCACTGTGCCTTGCTTGCACCAAGTCAATGGTTGCTTAGAATGAGCTGAAAGTAGTGTTCTGACACAGGAGTTGTCTTGGTGGGAAGTGATTTCACAGGACACAAGAGAGGCGGGCAGACTTGCTTATGAAACAAAGCAAAGACAGAACAG
Seq C2 exon
CATCTCCCAGATGGCTCTGTGCCCAGTGCACATGTTGAAATTTATCTTCTACCACATCCCAGTGAAGTTCGGAGAAAGAAAACAAAGTGTGTTCCAAAATGCACTGACCCAACTTACAATGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(12.0=31.2)
A:
NO
C2:
PF0016825=C2=FE(49.4=100)
Main Inclusion Isoform:
ENSMUST00000111868fB14636
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGACAAGAGCCCTAAGGTG
R:
AATTTCATTGTAAGTTGGGTCAGTGC
Band lengths:
212-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types