MmuEX1020340 @ mm10
Exon Skipping
Gene
ENSMUSG00000051344 | Plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:MGI Symbol;Acc:MGI:2443627]
Coordinates
chr1:64892752-64922482:-
Coord C1 exon
chr1:64921550-64922482
Coord A exon
chr1:64920677-64920887
Coord C2 exon
chr1:64892752-64892897
Length
211 bp
Sequences
Splice sites
3' ss Seq
GTCAAATCTTGTTCCAGTAGACT
3' ss Score
3.35
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCCCCTGTCTTGGATAGCCCCAAACAGTACCAAAATATCCTCAAATCAGGGACACTCTACAGACTGACTGTCCAAAACAACTGGAAGGCCTTTACATTTGTGCTGAGCAAGGCCTATCTTATGGCTTTCCACCCCGGCAAGCTAGACGAAGATCCCCTGTTGAGCTACAATGTGGATGTGTGTCTGGCTGTGCAGATAGACAACCTGGATGGTTGTGACTCTTGCTTTCAAGTCATTTTTCCCCAGGATGTCCTCCGCCTCCGGGCTGAGACCCGACAGAGGGCTCAGGAATGGATGGAGGCTCTGAAGACAGCAGCCAACGCTGCAAGGAGTTCTGAGCAAAACCTGCAAGTCACACTGCGGAACAAGCCCAAGGATCAGCTAGATGGCCGCGAGCTGCGGAAGAACAAACGCCAGTCTGTGACCACCAGCTTCCTGAGCATCCTGACCACGCTGTCTTTGGAGCGAGGACTCACTGCTCAGAGTTTCAAATGTGCAG
Seq A exon
ACTCTATAAAGTCAGTATTGAGGACAGCGTGGGGATGGCCAAAAGAGGGTGAAGAGCAGATGACTGCTGAGATAGGAGGGGAAGAAGCCCAGTGTCCCTGGAACACTGTAAGATTGACAGAGTGGACCTCACTCAGAGCTCTTCAACAGTGCTATTCCTCTTTATCCCCATTCTCCTCGCCTCTCACAAACACTGAAATAGGAAGAGAAAG
Seq C2 exon
GGTGCCAGCGATCTATTGGTCTCTCTAACGGAAAGGCCAAGGTGTGCAATTATAGCGGGTGGTACTACTGCAGCAGCTGCCATGTGGACGACAGCTTTCTCATCCCAGCACGCATAGTTCACAACTGGGACACCTCAAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051344_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=WD(100=30.4)
A:
NO
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Inclusion Isoform:
ENSMUST00000097713fB14809
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCTGCAAGGAGTTCTGAG
R:
ATGCGTGCTGGGATGAGAAAG
Band lengths:
296-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types