Special

MmuEX1020758 @ mm10

Exon Skipping

Gene
Description
PRAME family member 8 [Source:MGI Symbol;Acc:MGI:2140473]
Coordinates
chr4:143412426-143416952:+
Coord C1 exon
chr4:143412426-143413091
Coord A exon
chr4:143414105-143414343
Coord C2 exon
chr4:143416640-143416952
Length
239 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTAAATTTTTCAGAGA
3' ss Score
9.34
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TTTCCTTTTCCACGGAGACTATGTTGTCAATCAATACAGAAACAGAAAACGCCCAGACGTGGCGGAAACTCAGTCATCCAATCAGAGGACGGCTTGTGGTTGACAGGCGGGACTACAAACCGGAAATGTGAGACAGAATACGCGGACCGAGCCGGGGGAGGGGCGACCAAAAAGAAAACAAAAAACAAAAAACAAACCGCCGAAAAACAAAAAAATAAAAACCGCTTCAGGCCGGAAGTATAAAACGGAACCCGGAAGTGTGGGACCGGATACGGCTAAAACACTTCAGGCCGGAAGTGCGAGACAGATACGGATGAAAACGCTGCAGGCCGGAAGTGCGAGACGGATGAAAACGCCTCAGGCCGGAAGTTTGAAGTGAAGATGGCTATAAAAGCTTTAGAGAAGCTCGGGAAGACACTCACCAGCACTTGGAGTCCGAGCTTGGACTGACTGCCTGGGCCTGCTGGGATTCTGAGTTCTGCCATCAGTTCTTGTTTCTG
Seq A exon
AGACAGGGTTTCTTTTGTACCCCCTGCTGTCCTGGAACTAGCATTGAAGACCAGGCTGGCCTCAAACTCACAGAGACCTGCCTGCCTCTGCTGCTTCCTTGGCGTTGGGATTGAAGAGGTTTTATGGCACAGGACTACAAGTCCCATCTCGTCTGAGGACTGAAGCTATAGGAATGTAGTTGGTTTAGCCTGGATAATTTAACTTGACCTTGATCCAAATTAAAATAAAAAGAAGCCAG
Seq C2 exon
GATCCTTGACACTGAAGATCTGAAGGATGAGTGTCCAGGACCCACCCACACTCCTGCAGCTGTCAGTACAGAGACTACTGAGGGACGAGGCCCTGGCCATTTCTTCTCTGCAGTACCTTCCCAGGGCGCTTTTCCCACTGCTCTTCAAGGAAGCCTTCAATCACAGACAAACTAATGTCCTGAGGGCCATGGTGGCAGTGTGGCCCTTTCCCTTCCTCCCTCTGGGGACCCTGATGAAGACTCCCCACCTGGAGATCTTGCAGGCTGTGCTGGATGGAGTAGACATGCTTTGGACACAGAAGGTTCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046862_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGATTCTGAGTTCTGCC
R:
CACAGCCTGCAAGATCTCCAG
Band lengths:
307-546
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types