MmuEX1020995 @ mm10
Exon Skipping
Gene
ENSMUSG00000052099 | Prss51
Description
protease, serine 51 [Source:MGI Symbol;Acc:MGI:1921465]
Coordinates
chr14:64086234-64095010:+
Coord C1 exon
chr14:64086234-64086406
Coord A exon
chr14:64093647-64093818
Coord C2 exon
chr14:64094930-64095010
Length
172 bp
Sequences
Splice sites
3' ss Seq
ACTTACTGTGATGTCACCAGGTC
3' ss Score
8.47
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATTGTGTGTGCTATGTTTCACATTGTCAACACTGTTTCAAACTCAGATTCAAGACTACTGCATGTGTGTTCACTGTGGTGTGTTTGCTACACATATAGTTTTCTACTCTTACAAAAAGCTTTGTGATGGGAAATGGAGACCTGTAGTATTTCCCTACCATTGTTCCTCTGCAT
Seq A exon
GTCAGGCTCTGCCATGCACTTGTGATGCACAACTGTGGCAGCCACAGCTGCTGTTGTATCAATGTGGGCAGGGCATCAAGGCAGGCACCACTGCACTGGAATGACAACATGATGCTCCCACTTCTAATTGCACTGCTCATGGCTTCCAAGGGACAAGCTAAGGACCAGCAAG
Seq C2 exon
AATCAGTTCTGTGTGGCCACAGACCTGCCTTCCCAAACTCATCATGGCTGCCATTGCGGGAGCTGCTTGAGGTCCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052099_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=PU(1.1=28.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGCTATGTTTCACATTGT
R:
CATGCTGGACCTCAAGCAGC
Band lengths:
252-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types