MmuEX1021951 @ mm10
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160700712-160702460:-
Coord C1 exon
chr1:160702358-160702460
Coord A exon
chr1:160701691-160701796
Coord C2 exon
chr1:160700712-160700878
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGGGT
3' ss Score
4.19
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GAGTCCATGGGAAAGAGCTATGATGGGAGAGCTTACGTCATCACGGGCATGTGGAACCCCAACGCACCAATATTTCTGGCTCTTAATGAAGAAACGCCCAAAG
Seq A exon
GGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG
Seq C2 exon
ATAAACGGGTGTACATGACCGTTGCAGTGGACATGGTGGTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'25-26,'25-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(25.6=100)
A:
PF124733=DUF3694=PD(8.5=60.0)
C2:
PF124733=DUF3694=PD(27.1=64.3)
Main Inclusion Isoform:
ENSMUST00000028049fB15551
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGGAAAGAGCTATGATGGG
R:
AGTCTCTGTGAAAGTCTTTCTGCTG
Band lengths:
245-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types