MmuEX1021973 @ mm10
Exon Skipping
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99642883-99651637:-
Coord C1 exon
chr15:99651559-99651637
Coord A exon
chr15:99645000-99645004
Coord C2 exon
chr15:99642883-99642971
Length
5 bp
Sequences
Splice sites
3' ss Seq
CTGAGTGTTCTGCTCTGCAGCAC
3' ss Score
7.03
5' ss Seq
CCTGCTTGT
5' ss Score
-15.82
Exon sequences
Seq C1 exon
GGCGGCGCGGTTTTACACTGCCGTTAGTGAGGCGCGTCGCTGGTAGACAGCAGCCCTCCTGGGGCGCGGCGGCCGGAGA
Seq A exon
CACCT
Seq C2 exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059116=DUF869=PU(15.3=62.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGACAGCAGCCCTCCTGG
R:
GATAATCTCCATCCGGCGCAC
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types