MmuEX1022266 @ mm10
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:117109961-117352562:-
Coord C1 exon
chr9:117352389-117352562
Coord A exon
chr9:117252104-117252193
Coord C2 exon
chr9:117109961-117110118
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTCGCCTTTACAAGCGC
3' ss Score
4.88
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
TCCAACTCCACAGTGAGAGCCTATCAAAGCAGCAAGTCACGAGTGACCATGAGCCCTGGTTTCAGCTCCCAGTGGAGCAACAGCCAACCTGCCTGGAACACATACTCCTTCCCAAGAGCGAGCTTACACTACCAGTCTCATGCCAGCTATACATACTGCACTGGCCACCCCGTG
Seq A exon
CGCCTGCGATTGACACCACTAGAGACAGGCTGGTCACAGAGCAAACTGCTTCATCCGGACTGGACCGGGCAGCTGGGAGGAACCAGGCAG
Seq C2 exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAGCAGCGGGGAACAGTTGAGTAAGACAAACCTATACATCCGAGGACTTCCACCAGGCACCACTGACCAGGACCTCATCAAGCTATGTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX2-1/6=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.200 C2=0.691
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(30.3=37.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCAGTCTCATGCCAGCT
R:
CTGGTGGAAGTCCTCGGATGT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types