MmuEX1022285 @ mm10
Exon Skipping
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:160962271-160963569:+
Coord C1 exon
chr1:160962271-160962484
Coord A exon
chr1:160963116-160963189
Coord C2 exon
chr1:160963479-160963569
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCATTATTTATTAAAATAAGATT
3' ss Score
1.4
5' ss Seq
AATGTAGGC
5' ss Score
3.19
Exon sequences
Seq C1 exon
AATGTAGAAAGTAAAGGAACGAGAGAGCAGAGGTTGGACCTTCAGAGAAGAGCAGTGGAGACGAGCGATGATGACCTCATCCCGTTTGGAGACCGACCAACAGTCTCTCGATTCGGTGCCATCTCTCGAACATCCAAAACACTGTATCAGGGTGCTGGCCCACTGCAAGCTATAGCACCTCAGGGAGCACCCACAAAATCTATTAACATTTCCG
Seq A exon
ATTCTTGGAGTCTGAGGAGGTGACTGGCTGGATAAAGAAGATCTGAGTTTGGATCCCCAGTACCCACATAAAAT
Seq C2 exon
ATTACAGTGCATATGGAGCTCATGGTGGCTGGGGAGATTCTCCATACTCACCTCATGCAAACATACCTCCTCAGGGACACTTCATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423-'23-33,'23-32,24-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=0.000 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000161609fB15789
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGACCGACCAACAGTCT
R:
GAGAATCTCCCCAGCCACCAT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types