MmuEX1022870 @ mm10
Exon Skipping
Gene
ENSMUSG00000058900 | Rsl1
Description
regulator of sex limited protein 1 [Source:MGI Symbol;Acc:MGI:3044162]
Coordinates
chr13:67173207-67176574:+
Coord C1 exon
chr13:67173207-67173253
Coord A exon
chr13:67175756-67176283
Coord C2 exon
chr13:67176448-67176574
Length
528 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTATGTCATTCCAGCCA
3' ss Score
6.07
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCGGAAATCGTATGCGGCTATCTATTCCAGTTGTCTCTGACAAGAAG
Seq A exon
CCATAAAGATGCCACAGTGCCACTCAATATCTTGGCATATGCAGAAGCTGTCCAATGGGACTTAAAGCCTCATCAATAGAAGTTACATCATGCTTAGAAGCTACCACAGGTGACTTGTTAGGTTGAAACCTTAGAGGGGAACATACTAATGACATGTTATTAAAGCATCCTAAGCTCTCACTGCATTCTGATTGCTTTTCCTTAGACCTACACATGAGTGTGTAGCTCTTACTGTTCAAAGCACTTCTACACATGAGTGTGTAGCTCTTACTGTTCAAAGCGCTCCTACACATCAGTGTGTAGCTCTTACTGTTCAAAGCGCTCCTACACATGAGTGTGTAGCTCTTACTGTTCTTAGGGCTCCTACACACGAGTGTGTAGCTCTTACTGTTCAAAGCACTCCTACACATGAGTGTGTAGCTCTTACTGTTCAAAGCGCTTCTGTCTGCATCAGAGAGAACTCTGCAGAAAACTGAAGCTTACCAAAGCCCAGAGGACTATGTATGACCTTGTGATCTGACCCAATAG
Seq C2 exon
GAAATGTTGTCCTTCTGGGATGTAGCCATTGATTTCTCTCCAGAAGAGTGGGAATGCCTGGAGCCTGCTCAGTGGGACCTGTACAGGGATGTGATGCTGGAGAATTTCAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058900_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000021997fB16161
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types