MmuEX1022935 @ mm10
Exon Skipping
Gene
ENSMUSG00000039656 | Rxrb
Description
retinoid X receptor beta [Source:MGI Symbol;Acc:MGI:98215]
Coordinates
chr17:34032288-34033044:+
Coord C1 exon
chr17:34032288-34032388
Coord A exon
chr17:34032401-34032484
Coord C2 exon
chr17:34032827-34033044
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCGGCGGGGCCTGCGTGCGCGGT
3' ss Score
-13.01
5' ss Seq
CGGGTATTT
5' ss Score
4.84
Exon sequences
Seq C1 exon
TTTGTAAACACGCGCCCTCGACGTCCCGAGGCCCAGCGCCCTCCCCCGGGGCGGGGCGCGGCGGGGGAGCTTCCGCCCTTCAGGTTCGGGCCCGCGGCGGG
Seq A exon
GGTCTCGGGCGTGGGAAGGACACCGTTCCCCGTGGGCTGGAGGACTCTGGGCATTCGAAGGCTGAGCTTACGCTCTGGGACCGG
Seq C2 exon
ATTCCCGAAGCCCAGACAGCTCCTCCCCAAATCCCCTTTCTCAGGGGATCCGTCCGTCTTCTCCTCCTGGCCCACCTCTTACCCCTTCAGCACCTCCACCTCCAATGCCACCCCCGCCACTGGGCTCCCCCTTCCCAGTCATCAGTTCTTCCATGGGGTCCCCTGGTCTGCCCCCTCCGGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039656-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF118253=Nuc_recep-AF1=PU(62.9=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCGCCCTTCAGGTTC
R:
AACTGATGACTGGGAAGGGGG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types