MmuEX1023154 @ mm10
Exon Skipping
Gene
ENSMUSG00000026927 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
Coordinates
chr2:26381375-26384821:-
Coord C1 exon
chr2:26384682-26384821
Coord A exon
chr2:26383469-26383694
Coord C2 exon
chr2:26381375-26381762
Length
226 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCTCTCTGCTTTAGGCA
3' ss Score
10.7
5' ss Seq
GCAGTACGG
5' ss Score
2.11
Exon sequences
Seq C1 exon
GCCCAGCTCTCAAACTTGAGGCGAGAAAATGAAGCCCTGCGGTCAGGCCAGGGTGCCAGCCTTTCTGTAGTGAAGCAGAACACCGACGTGGCCTTGCAGAACCTCCACCTTGTCATGAACAGTGCACACGCATCCATAAA
Seq A exon
GCAGCTGGTGTCTGGGGCAGACACACTGAACCTTGTTGCTGAAATCCTCAAGTCTATCGACAGAATTAGTGAAGTTAAAGATGAGGTGGACTCTTGAGACGCTCTACCTGCCACCGGGTCCCGTCACCTCTGCACCGAAGGCACCACACATCTTCCGAATGTGTTCCTGTCTATGCAGTCCTCATCAAAGCATTTCACGGCCTAATCATGTGACTGGCCATCTGCA
Seq C2 exon
CTCTGCTTCCTGAATGTTGGATTAAAGGGATGCACTATTACTCTTTGATTTCATGATTCTGTACCCACTCCAGTAGTGTTGCAGGTGACTTCTAGCTTGTAGTCAGTTCTCCATAAGACCAAGGCCCTTCCCAGGTCCCACAAACTGGCCAGTCGCCAGGCTTGGTTTTCACCAGCCTTGAGCCTCAAGCCACTGCCATGCTTCTCCTACTCACAGGCATTATTAGGCACTAGGAGGACCCAGCTGCCTAGGGAGAGTAGAATTAAGGAAGCTGTTAAGAATTAATAATGGAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026927_MULTIEX1-7/7=6-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=FE(24.7=100),PF131661=AAA_13=PD(12.5=31.9),PF0076914=ERM=FE(25.6=100)
A:
PF041569=IncA=PD(13.8=90.9),PF0026115=Tropomyosin=PD(16.7=93.9),PF0076914=ERM=PD(16.7=90.9)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAGCCTTTCTGTAGTG
R:
TGCCTGTGAGTAGGAGAAGCA
Band lengths:
308-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types