MmuEX1023233 @ mm10
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140304609-140340157:-
Coord C1 exon
chr2:140340102-140340157
Coord A exon
chr2:140335992-140336160
Coord C2 exon
chr2:140304609-140304777
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTGTTTTCCAATAGTCT
3' ss Score
8.88
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATACTGAAGCAGAAAGATATAACAGAAAACAAAAAGAAGTGAATGTCACCACACAG
Seq A exon
TCTTAGGCAACCCCTGTGAGAGGGTCATTTGACTCCCAAAGGGTTGAAACCCACAACTTGAGAATCACTGCCTAGAACATTGTTTCCCACAATCCACTTGTTCTGGTCCAGGAAAGGCAGTACACATCTATCGCCCTTTGGATTTGCTACAACATTGGACCATAAGGAG
Seq C2 exon
GTATCAGTGAGCAAAGTCAAGCAATTTTTATTGTATCTACTGGAACAAGGAAACGCAAATAAAATAACCAATAAAAGAGAAAATCCCTTAGAAAAAAAGAAGCATCAACATAAGTTAAAAATAAAAGGAATTCAAAATAAGAATCTCCTGAAGAGAAATCAAAACTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764_MULTIEX2-2/4=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.520 A=1.000 C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000122367fB16413
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAAACAAAAAGAAGTGAATGT
R:
TGGTTATTTTATTTGCGTTTCCTTGT
Band lengths:
106-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types