MmuEX1023251 @ mm10
Exon Skipping
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:164139327-164141537:+
Coord C1 exon
chr1:164139327-164139453
Coord A exon
chr1:164139879-164140068
Coord C2 exon
chr1:164141352-164141537
Length
190 bp
Sequences
Splice sites
3' ss Seq
CCTCCTGTCCCCACCTGTAGATC
3' ss Score
11.26
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
GAGGAAGCATGTGCCTCCTCCTCCTCCTCCTCCTCTTCTTCCCTGTGAGCCCAGAACCCACCCAGGAACAGCATCTCTGACACATGGTCCTTAGTAGAGTCAAGCTTCTTCAACCCTAATTTTAAAG
Seq A exon
ATCACTTCCGGGACACATACCATTGCTGTCCTCATCACTGACAAGGCTCCTCACTCTCTGTTCCTCTGGAGATCATGTCTGGCCACTGAGCTCAGCCCCTGATGCCCTGCTCAATCTTCTCAGGAAACGGAGACCTCCAGCTCCATCCTTCTGCTTTTTCTGCTTATCCAAAGGCAGATTCTGAAATACT
Seq C2 exon
CCATCAAGTGTCCAGGAATCTTCGCCCCAGAGCAAGGCAACCTGGATTGTTCTCATGTCCACGGAGAGTTTGGTGTTGGCTCTATCTGTCACTTCTCCTGCAATGAGGACTTTGAGCTACTGGGATCTGAAAATGTGGAATGCACAGTGTCTGGAAGATGGTCAGCACCTCCGCCAACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-'11-13,'11-11,12-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
ENSMUST00000162746fB16426
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCCCTGTGAGCCCAGAA
R:
TCCAGACACTGTGCATTCCAC
Band lengths:
247-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types