MmuEX1023602 @ mm10
Exon Skipping
Gene
ENSMUSG00000043183 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54539704-54541552:+
Coord C1 exon
chr13:54539704-54539856
Coord A exon
chr13:54541208-54541301
Coord C2 exon
chr13:54541424-54541552
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTGTTTGTTTTAAGATA
3' ss Score
8.92
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGATGTTATTAAGTGGCTGGTCAAAGCAGTGACTGAAAATGAATTAACTCCACCCCAAGATGAGACTCAGACCTCTCCAAGAACAGGAGTCTTGAAAACTAGCAGTGACCATCTGTCTCCCCGGCCTAACCAGAACAAGAACACCAATCAACT
Seq A exon
ATAAAATCTCAACGGTAACTCTAACTGGCCTGAAACTCAGTACATAGATCAGGCTGGCCTGCCTGTCTCTACCTTCTGAGTGCCAGAATTAAAG
Seq C2 exon
GATTGTGTGTCAGCTTCAGAGGATGTTGTCCATCGCTGTAGAGGTGGACAGGACTCCAACCTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGATATCCCTGAGAGGAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000121401fB16654
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCACCCCAAGATGAGACT
R:
GTTGGAGTCCTGTCCACCTCT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types