MmuEX1023845 @ mm10
Exon Skipping
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6191264-6217118:-
Coord C1 exon
chr6:6216996-6217118
Coord A exon
chr6:6191909-6191989
Coord C2 exon
chr6:6191264-6191317
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGCTTTTCCCCCCAGTGA
3' ss Score
10.34
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGAATCACCGCCCCCACCTCTGCTCGGGACGGGAAGTGAGTCGCCGGGGTCCCCGGTGCAATCCAACCAGAGAGCAGGTCTCAAAGCCGCCTGTACCCCGGCCGAAGCATGGCGGCCGCCAAG
Seq A exon
TGATGTTTTTGGACTTTGTGGCCTGGAGAATTAAGCACAACACCTATTCTGAGCTAATCTGTCAAGTTTTCCTGGTGGAAG
Seq C2 exon
GTGGCTTTAACCAAGAGAGCCGATCCAGCTGAGCTTAAAGCAATATTTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134991=EF-hand_7=PU(14.5=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCACCGCCCCCACC
R:
ATTGCTTTAAGCTCAGCTGGA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types