MmuEX1023901 @ mm10
Exon Skipping
Gene
ENSMUSG00000027880 | Slc25a54
Description
solute carrier family 25, member 54 [Source:MGI Symbol;Acc:MGI:1921936]
Coordinates
chr3:109085733-109094295:+
Coord C1 exon
chr3:109085733-109085859
Coord A exon
chr3:109092200-109092528
Coord C2 exon
chr3:109094208-109094295
Length
329 bp
Sequences
Splice sites
3' ss Seq
GAAATTTCTCTTTGCAACAGATG
3' ss Score
7.53
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAGATTTTTATGGATGCAGATTCCAATGCTGATTCAGGACTGGATTTTGAAGAATTTGTGCAGTACCTTCAAGACCATGAGAAGAAAATGAAATTGGCCTTCAAGAGTCTGGACAAAAATGATGATG
Seq A exon
ATGGAGACCATTACAGAAGATCACATGCAGAGCTGTGGAGCCAAGTCGCAACTGATAACATCTGCAACACAATTCCTGCACTTAAGATTCAGGGGTCATTATTGAAGAGAGGGCAGAAAGTTATAACTCTGAAGTATCACCAACATGGCTGCCTAAACAAGACCTGAGGAAGGACAACACCAATAGACATACTAATATGGAAGGAGGAAAAAAAATCTCAAGAAACCTCAACCTTAGACAAAGAGTGACAGGCATCTAAGGGATCTGAAAGCTAGATAAATAGTCTTCCCCAGGAAAGAGCAGACCAATTGGTTATCTGCTACCAAATG
Seq C2 exon
GCGTAATAGATGCTTCAGAAATAGTCGCTGCCGTGAGATCATTGGGAATCCACATTTCTCTCTCTCAGGCCAAAGACATCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027880-'3-2,'3-1,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.2=51.2),PF102234=DUF2181=FE(48.8=100),PF134991=EF-hand_7=PU(26.2=39.5)
A:
PF102234=DUF2181=PD(23.7=32.1)
C2:
PF102234=DUF2181=FE(33.7=100),PF134991=EF-hand_7=FE(44.6=100)
Main Inclusion Isoform:
ENSMUST00000029478fB16860
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTTTTATGGATGCAGATTCCA
R:
TTTTCAAGATGTCTTTGGCCTGAGA
Band lengths:
214-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types