MmuEX1024056 @ mm10
Exon Skipping
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75548869-75550652:+
Coord C1 exon
chr1:75548869-75549065
Coord A exon
chr1:75549833-75550053
Coord C2 exon
chr1:75550504-75550652
Length
221 bp
Sequences
Splice sites
3' ss Seq
AGTGAGGCCTTGGCCACCAGGGG
3' ss Score
0.7
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
CTCCCCCAGTCCCCGGGCCCGGGCTTCCCGAATCTCCACAGAGAAGAGCCGGCCCTGGAGTCCATCAGCCAGCTATGACCTGCGGGAGCGATTGTGCCCAGGCAGTGCCCTGGGCAACCCTGGGCCAGAGCAGCGGGTGCCCACTGACGAGGCGGAGGCTCAAATGTTGGGTTCTGCCGATCTGGACGACATGAAGA
Seq A exon
GGGAATGACAAGCCCGCTGGACAAGGTCATGGAGCCCAATGGGACTCTGAGTCCTAAGCCCGGGGACACTGAAGACCAAGGCCCTGGGAGGAATCCAAGCCCCAGCGCTGGTGACTTAGTGGCCTCAGAGGATTTGGAAATGTTTGTACTGGACTTTGAAGACTATGGCCTATGGGAGCCCATGAGGGGCCACCCGAGCCCCCTGGCAGGGGTAGCTGCTT
Seq C2 exon
GTCATCGGCTGGAGGATAACCCCGGGGTGCGGCGACACTTGGTGAAGAAACCATCCCGGATACAGGGTGGGAGAGGCAGCCCCAGTGGCCTGGCGCCCATCTTGCGCAGGAAAAAGAAGAAGAAGAAGCTGGATCGGAGGCCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-'18-18,'18-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.696 C2=0.796
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000124341fB16968
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTCCATCAGCCAGCTA
R:
CTCATGAGGCCTCCGATCCAG
Band lengths:
292-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types