MmuEX1024069 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100803474-100806411:+
Coord C1 exon
chr15:100803474-100803574
Coord A exon
chr15:100804025-100804637
Coord C2 exon
chr15:100806250-100806411
Length
613 bp
Sequences
Splice sites
3' ss Seq
AAACTCACTCTGTAGCCTAGGCT
3' ss Score
-1.11
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AAAGTGCCTACTGACTTACAGATGCGGTGGCGTGGAGAGGCGGTCCGTGGAGGGAGTCTGGCAGACTGGCAAGCCGTAGAGATGATCTCAGACCTCGGAAG
Seq A exon
GCTGGCCTCGAACTCGTGATCCTCCTGCCTCTGCCTCCTTCAGCAAATCCTACCGGCATGGTTTCTTTAAAAAACACAGAAACAATGATAAGAATGTGCTTTGGGGGGCTGTGGCTGCTGCAGCAGCCGACATGATTTACCTCGTGCTCTGGCAGAAGAGCGGTTTTGTCAGCTGCATAACAGTTTGTGCTGTTATGTGATGTTTTAATTCTGGGAACTTCTCAAATCGTACATAGTTTCGAGGGCCCCGAGAGGCCAGTGGGTGGTTGTTGGTCGTTTAGGGAGGTTGGTGAGGTTTGTTAGTAGCTGTGGTCAAACAAGAAACAAAAGGAAAGGAATGAGGCCCAGGGCCTCCCCCGCTGCCTTGCTCCCCTCTGTCCTTGCTCCTCCCCTATCTCGTGTTAGAGGGTGAAACTGGGGGGGGCAAAGGGTGGGAAGAGGAAGAACCCACAAAGCAACAAGGACCAGCTACAGGAAGGGCTCAGGGCGGCAGGAAGACAAAGTGCGAGCCTTTAGACCCAACACACAGGAGGCAGAGGCAGGCAGATCTTGGTGAATCTGATGCCAGCCTGGTCTATGTGGCAGGTTCCTGGCCAGCCACGGCTACTCCATG
Seq C2 exon
CCAACAAGGGACGATCGAGGATGGTTTATTAATCCCATTGGCCCCAATCCCTGGTGGACTGTGATAGCCGCAATTATCCCAGCTCTCCTGTGCACTATCCTGATATTCATGGACCAGCAGATCACCGCTGTCATCATTAACAGGAAGGAACACAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'45-42,'45-41,46-42
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(3.9=48.1)
A:
PF0095516=HCO3_cotransp=PD(5.9=44.4)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
ENSMUST00000023776fB16980
Main Skipping Isoform:
ENSMUST00000023776fB3792
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTACAGATGCGGTGGCG
R:
TGAGCTTGTGTTCCTTCCTGT
Band lengths:
249-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types