MmuEX1024735 @ mm10
Exon Skipping
Gene
ENSMUSG00000039660 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30173453-30175069:-
Coord C1 exon
chr2:30174922-30175069
Coord A exon
chr2:30174268-30174286
Coord C2 exon
chr2:30173453-30174185
Length
19 bp
Sequences
Splice sites
3' ss Seq
ACTAATTACTGTTCCACCAGTAT
3' ss Score
3.94
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCATGCCCTTGTGGTGTTTGGAGGCCTCCAAGGGCTAGAAGCTGCAGTGGATGCTGACCCGAACCTTGAAGTGGCTGACCCCAGTGTCCTCTTCGACTTCTATGTCAACACATGCCTTAGCCAGGGCAGCCGTACCATCCGCACCGAG
Seq A exon
TATCCCTCCTGACCCTGAG
Seq C2 exon
GAGGCCATACTCATCTCGCTGGCTGCTCTGCAGCCTGGTCTCACCCAGGTGGGATCGAGGCCCGCCTCCCCGCTTTCTGGACCCAGGATGTAGAGGAAGCAGCAGGACAGGAGGATCATGGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGCTCCAGTGAGTCCTCCACCATCACTTGCTGCCAGCAGTGATAGCCTTGAGGTTTCCAGCTCGAGCCAGAATATTGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATGCTCTCGATGGGCACCAGGAACCGCTCCAGAGGGATGGTCTCATCCACGGGGGCATTGGGCATCACGTAGGAACGTAGCTCGATCTGCCCACCGGCTGCCTCCAGGATCAGCACCTTGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTCCCAATAACCTGGTACTTCACATAGGACTTCCCATCAGCCTCGGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=1.000 C2=0.433
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
A:
PF0259812=Methyltrn_RNA_3=PD(0.1=0.0)
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=32.3)
Main Inclusion Isoform:
ENSMUST00000100220fB17402
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTTGAAGTGGCTGACCC
R:
GCAGCCAGCGAGATGAGTATG
Band lengths:
114-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types