MmuEX1024941 @ mm10
Exon Skipping
Gene
ENSMUSG00000024172 | St6gal2
Description
beta galactoside alpha 2,6 sialyltransferase 2 [Source:MGI Symbol;Acc:MGI:2445190]
Coordinates
chr17:55445389-55482894:+
Coord C1 exon
chr17:55445389-55445809
Coord A exon
chr17:55463019-55463171
Coord C2 exon
chr17:55481905-55482894
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGGAACTCATCTTCCTCTAGATT
3' ss Score
7.98
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACCCAGCTGCCTGGCGCGCAGGTAGCCCGGCTTTTGCTCTGTCTACAGAGGGCTGTGTGTTCGAAGCCAGCACACAAAGACTCACTTCCTCCCGGCCAGCTTCCCAGACCGCCCTGCCCACCACCGGCGGCCGGTGGCATTCCAGAGGCCACCACCGGGACATTCCTGTGCCCGGGTGCCAGGTACTTGGAGCAGAAGCCATTCGGGGAGCCCTTGGAGCCGCTCAGCTGGTGAAGGTGGCGGCTGGGATTAGCACGCCTTTTTAGGCAGCCGCGCCGCCCCACGCAGCGGAGTCTGCAATCGCTGTACGACAGGCAGGCTCTGCGTCGCCAGAGCGTCCCCGCCTGCGCTGGCCGCGGGGCAAGCTGCGGGCCGGAGCGCTCGCGGGAGGCCGATCAACTCCCCAGCGCCTAGCCAGCAG
Seq A exon
ATTTCGCTCAAGCATCTGCTCAAGTGTAAAGATTTCCTAGGGAGGCTCCTGGATGGTCATCCTAATCTAGTGAGTCTTGAGGAGAACCCGGGATGGTGCTTTTTAAACACATCTGCTTAGAGATTCCAAGGCAGCATCAGGAATCACACACTG
Seq C2 exon
GTTTTGTCCACCTCGTAGTGCTTTAGAACCCCAAGGTGAAGTGCTGGCCCCAAAGATCTGCAATGAAACCACACTTGAAGCAATGGCGACAACGAATGCTCTTTGGAATATTTGTTTGGGGGCTCCTCTTTTTGGCAATTTTCATCTACTTCACCAACAGCAATCCTGCGGCACCTATGCCCAGCTCCTTTTCCTTCCTGGAGAGACGTGGGCTCCTGCCTCTACAGGGCAAGCAGCGGGTCATCATGGGCGCTTTGCAGGAACCCTCTTTGCCCAGAAGTTTGGATGCAAGCAAAGTGCTGCTGGACAGCCACCCTGAGAACCCTTTCCACCCTTGGCCTGGGGACCCACAGAAATGGGATCAGGCCCCAAATGGCTTTGACAATGGGGATGAGTTTTTTACATCCCAGGTTGGGAGGAAATCACAAAGCGCTTTCTATCCCGAGGAAGATAGCTATTTTTTTGTTGCGGATCAGCCTGAGTTGTACCACCACAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024172_MULTIEX1-2/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.242
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(27.5=23.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGATTAGCACGCCTTTT
R:
ATTGCAGATCTTTGGGGCCAG
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types