MmuEX1024948 @ mm10
Exon Skipping
Gene
ENSMUSG00000052544 | St6galnac3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:MGI Symbol;Acc:MGI:1341828]
Coordinates
chr3:153506738-153508925:-
Coord C1 exon
chr3:153508825-153508925
Coord A exon
chr3:153507853-153507968
Coord C2 exon
chr3:153506738-153506916
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCCCCATCTCTGTCTTCAGAGT
3' ss Score
10.14
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGAAAAGCATTTGTCTCTTTATAACTCTGTAATCCTTAGACCTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Seq A exon
AGTTTTACCAGCAAACATCTCTCTCAGAAAGTACAGTAGGGGGAAAATCCCTCAAAAACATAGCGAAGCACTCAGAGGGAGTGAGACTGTGTGCACAGACATTTCCATGTGATGGG
Seq C2 exon
GGTCTCAAGATGTTCATTCCGCTCCCTCTCTCAGTTCTCTGACTTTGGTCCCTGAAGACCTTGTCATCCTCTCCTGTACTCAACGCACTCATTGACGGCAGGACTCTGCAGAGGCCATCATTTAGAAGGAACCGGTGTGCAGCTGTCTCCGTGTGAGTGTGGATCTCACAAGGGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052544-'18-14,'18-13,19-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAATCCTTAGACCTGCAGCA
R:
TGAGATCCACACTCACACGGA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types