MmuEX1025522 @ mm10
Exon Skipping
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38914304-38916870:+
Coord C1 exon
chr19:38914304-38914413
Coord A exon
chr19:38915705-38915901
Coord C2 exon
chr19:38916612-38916870
Length
197 bp
Sequences
Splice sites
3' ss Seq
AATTCTGAGGATTTGTGTAGTAA
3' ss Score
-4.72
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATAGATTG
Seq A exon
TAAGCAACAGCCAGTTGACTTTAGTATCATTGGTGAATTTTGATAAGAAGTGGAGAATTTGGGGCTGGAGAGATAGCTCAGTTGTTAACAGCACTGGCTGAAGCTGGGTTCAACTTCCAGCACCCTCAAAGTGGCTCGCTCACAACTGTAACTCCAATCCCAGGGAATTATTGGATGCCCTCTTCTGGTCTCCTCAG
Seq C2 exon
GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(15.9=100)
A:
PF0056613=RabGAP-TBC=PD(0.5=6.7)
C2:
PF0056613=RabGAP-TBC=PD(19.9=51.7)
Main Inclusion Isoform:
ENSMUST00000037302fB17902
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTCGTATAATCTGACACCAG
R:
TGCAGCTGAAAAGCTTTTCTGA
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types