MmuEX1025848 @ mm10
Exon Skipping
Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13339665-13365195:+
Coord C1 exon
chr8:13339665-13339739
Coord A exon
chr8:13356351-13356484
Coord C2 exon
chr8:13365089-13365195
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTACCTGCCTGGCCTTACAGAAT
3' ss Score
9.48
5' ss Seq
CTTGTATGT
5' ss Score
3.95
Exon sequences
Seq C1 exon
ATAAGTACGGTTTCTTCTGTGGAGGGTACGCAGTTAAAGCCTTGATTTCCTGGATCTGGTAACATGGCAAAAGAT
Seq A exon
AATCTCACTCACTCTTAGCATCCTGGTGCTTCCGTCTGTAACTGTGTTGCCACGTGACTTTGTTCAGCCTTCCAGCCTGGCCACGCCCACACATGGCCCTGCCATGGTCCCCAGAAGCTTCCGACAGCTCGCTT
Seq C2 exon
GTGTGGTATCTCTTGTAGCCGTCCACCCGTCCACAGTCAACACACTTGGGAAGCAGCTTTTGCCAAAAACCTTCGGACAGTCCAATGTCAATATCACACAGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482_MULTIEX1-1/6=C1-4
Average complexity
S
Mappability confidence:
86%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=1.000 C2=0.172
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=PU(2.6=50.0)
A:
NO
C2:
PF059717=Methyltransf_10=FE(46.1=100)
Main Inclusion Isoform:
ENSMUST00000209885fB18115
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGGTTTCTTCTGTGGAGGG
R:
CACTTGCTGTGTGATATTGACATTGG
Band lengths:
178-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types