MmuEX1025954 @ mm10
Exon Skipping
Gene
ENSMUSG00000032289 | Thsd4
Description
thrombospondin, type I, domain containing 4 [Source:MGI Symbol;Acc:MGI:2672033]
Coordinates
chr9:60428164-60482495:-
Coord C1 exon
chr9:60482423-60482495
Coord A exon
chr9:60432785-60433004
Coord C2 exon
chr9:60428164-60428525
Length
220 bp
Sequences
Splice sites
3' ss Seq
TATGTACGTCTGTCCAACAGGGA
3' ss Score
8.67
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
TGCCCTGAGCACCCTCCTGCTGCTGCTTGGTTCTCAGCTTGTCTGCCCGCAGCCTTCCACTGAACACAGAAAG
Seq A exon
GGAGAACCCATGATCAGGGCCACTGGCATACTCTTCTGCCTTGTCTCAGAAGTCCAGTGCTCTCTCACTATAGACTCGATGGCATAAAACCAGAGAGATGAATTCCCTCACAGTTCTGCAGACCAGATGTCACCAGATATGTGTGCTTTCCCAAAGTTCTGGGTGGAGCATCCTCAGCATCTGGTGGCTCCAGGCCCCCTGTGGCTTTGACTGTATCCAG
Seq C2 exon
GTCCCACAACGGATGGCAGTGACCGAGGGAACCCCAGAGGACAGTGGCAGTGGCTCCCCAGGTGTGTGGGGCTCCTGGGGCCCCTGGTCTGCCTGTTCTCGCAGCTGCAGTGGTGGTGTGATGGAGCAGACACGGCCCTGCCTGCCCAGCTCCTACCGTGCTCGAGGAGGCTCCCGGCCCAATGGCCGTGCACTGTCCATCACTGGCCACGTTGTGTCAGCCGTACGGACCTCAGTACCACTGCATCGAAGCCAGGAGGACCAAAGAGCCCTGGCTGGCTCCAATGCTAGCCGCCAAGGCCCTGCAGTGGTGCGAGGCAGCCGACATCCACAGGCCCGGGGCCGTGAACCCTCAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032289_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.000 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=28.9)
Main Inclusion Isoform:
ENSMUST00000098660fB18196
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTTGGTTCTCAGCTT
R:
AGTGGTACTGAGGTCCGTACG
Band lengths:
296-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types