MmuEX1026021 @ mm10
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105184212-105240456:+
Coord C1 exon
chr11:105184212-105184294
Coord A exon
chr11:105206310-105206405
Coord C2 exon
chr11:105240361-105240456
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTTTATTTTTTTAGACA
3' ss Score
8.25
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AAATGATGGAAGAACTGCATAGCCTGGACCCACGAAGGCAGGAATTACTAGAGGCCAGGTTCACTGGAGTTGGTGTAAGTAAG
Seq A exon
ACAGGGTGTTATGTAGCTCATGCTGGCCTGAAACTTACTACATAGGATTGCCTTGAACTACTGAATGTTCTGCCTCCAAGAGTGCTAGGCTAGCAG
Seq C2 exon
GCTCAACAAAACAGTCCTTCTTCTACGGGTTCTGGCAATACAGAACATTCTTGCAGCTCCCAAAAACAGATCTCCATCCAGCACAGACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694_MULTIEX1-1/10=C1-7
Average complexity
C3
Mappability confidence:
95%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.000 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000106939fB18243
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAACTGCATAGCCTGG
R:
TCTGTCTGTGCTGGATGGAGA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types