Special

MmuEX1026547 @ mm10

Exon Skipping

Gene
Description
tubulin polyglutamylase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25158244-25168694:-
Coord C1 exon
chr18:25168527-25168694
Coord A exon
chr18:25165869-25165935
Coord C2 exon
chr18:25158244-25158323
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTCCATGGCTTCTGCATCAGCTC
3' ss Score
2.3
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
AGCCGGCAGGCCGGCTGTCCACGGCGGCGCCGGGGACTGGGGCCGCCGCCGCCGCCGCCGCTGCGCGCGGTGTGAGGACGCGTGCCATGGAGGAGACAACGCCCCCACTGCAAGCCGGCAGCAAGCCGCACCTTGAGAAGTTGACCCTAGGCGTCACTCGCATCCTGG
Seq A exon
CTCCTGTTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAGCAGCAGTATGGAAGT
Seq C2 exon
AATCTTCCCCAGGTGTGACCGAGGTGAGCATAATAGAAAAGCTGCCTGCTGAGCGTCATATGATTTCTTCATGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.597 A=0.000 C2=0.074
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
ENSMUST00000148255fB18575


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGACGCGTGCCATG
R:
TGAAGAAATCATATGACGCTCAGCA
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types