MmuEX1027164 @ mm10
Exon Skipping
Gene
ENSMUSG00000069053 | Uba1y
Description
ubiquitin-activating enzyme, Chr Y [Source:MGI Symbol;Acc:MGI:98891]
Coordinates
chrY:829141-831323:+
Coord C1 exon
chrY:829141-829337
Coord A exon
chrY:829694-829780
Coord C2 exon
chrY:831259-831323
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCAACCACATTCCAGGGT
3' ss Score
5.14
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
Exon sequences
Seq C1 exon
GATTATACGTGGACCGCCGTTGTGTTTACTATCGTAAGCCTCTGCTGGAATCAGGCACGCTGGGCACCAAGGGCAACGTGCAGGTGGTTGTTCCCTTCTTGACAGAATCTTACAGCTCAAGCCAGGACCCACCTGAGAAATCCATCCCCATCTGCACACTGAAGAACTTCCCTAATGCCATTGAGCACACCGTGCAG
Seq A exon
GGTAGGCTCCATGCCTTGAAGAAGGTGGCCAGGTGGACCTCAGGTTTTTTCTTGTGCACTTCTGTTTTGGTATTACTTGTCTTGCCG
Seq C2 exon
TGGGCTCGGGATGAGTTTGAAGGGCTCTTCAAGCAGTCAGCTGAAAATGTTAACCAATACCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069053_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(20.7=45.5),PF105854=UBA_e1_thiolCys=PU(73.3=50.0)
A:
NO
C2:
PF105854=UBA_e1_thiolCys=PD(22.2=45.5)
Main Inclusion Isoform:
ENSMUST00000115894fB18974
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGGAATCAGGCACG
R:
CTTCAAACTCATCCCGAGCCC
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types