MmuEX1027695 @ mm10
Exon Skipping
Gene
ENSMUSG00000059305 | Vpreb1
Description
pre-B lymphocyte gene 1 [Source:MGI Symbol;Acc:MGI:98936]
Coordinates
chr16:16868403-16870843:-
Coord C1 exon
chr16:16870688-16870843
Coord A exon
chr16:16869066-16869190
Coord C2 exon
chr16:16868403-16868978
Length
125 bp
Sequences
Splice sites
3' ss Seq
CAGTGACCCTCTCCCCAAAGCAG
3' ss Score
3.31
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCCACTGCTCACCCGCCGTGCCGCTGCGCCTCTCGCTCCGGCTGTGCTTTCCCCGGTGGCCACTCACGAACTCACTTCCGGCTCTGTCCGTCTGTGGCGTCCCCTCATCTGCCCTCCGATGTCGACACTAAGGTGTCTGCAAGTTCCGAGGCTG
Seq A exon
CAGGGAGGAGAGTGCTTCCCAGCTGGTCAGGGCCCAGGAGCAGTGGCTGTAGGGGGCAGGGTGCTGCAGGTCTGGAGCCATGGCCTGGACGTCTGTCCTGCTCATGCTGCTGGCCTATCTCACAG
Seq C2 exon
GTTGTGGCCCTCAGCCCATGGTGCATCAGCCACCATTAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCATAACATTGGCATTTACAGCATTTACTGGTACCAGCAGAGGCCGGGCCACCCTCCCAGGTTCCTGCTGAGATACTTCTCACACTCAGACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGACCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCAGCCTGAGGACGAGGCTGTGTATTACTGTGCCGTGGGGCTCCGGAGCCAGGAAAAGAAGAGGATGGAGAGGGAGTGGGAAGGAGAAAAGTCGTATACAGATTTGGGATCTTAGGCTCTGGAGACATTCAGACCCTGAACTGAAGACAGAGTTTGCTTTGCTCGGCTAGTCTGGTATGGGAAGGAGGGGTAGAACGTGAGGTTTTGCAGAGCCTAGAAGATGGAATTATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059305_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0768612=V-set=WD(100=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCACTTCCGGCTCTGTC
R:
ATCTCAGCAGGAACCTGGGAG
Band lengths:
252-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types