MmuEX1027696 @ mm10
Exon Skipping
Gene
ENSMUSG00000000903 | Vpreb3
Description
pre-B lymphocyte gene 3 [Source:MGI Symbol;Acc:MGI:98938]
Coordinates
chr10:75943057-75949657:+
Coord C1 exon
chr10:75943057-75943290
Coord A exon
chr10:75948280-75948409
Coord C2 exon
chr10:75949143-75949657
Length
130 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTATTGTGGTCCAGAGA
3' ss Score
5.49
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
AGTTTGCTACCTACTGCACACACACAGCATGCGGATCCCTCCTGTAGTGTTATCTTAGTCCCCCAAGTCCCCTTCATCTTTAGAGAATCTTTCTGTTCTTCAGGTTCATATGGTCGCCCCTCCTCCCTGGCATCCACGGCTGCTTCCTGCTGGTCTTTGCGATGGCGTCCCATAAGTGGGCTCAGAGCATAGGGCCCATGGTACATGCTTTCTTCATGAAACCTGCTCCGGGTT
Seq A exon
AGACTTCCCCATCCCTGTACTACAAGCATCCGGAGCACAGTACTGCAGAACTCTAGGTCGGCCTTTCTGCTTCTGGCCATGGCCTGCCCTGGTTGCCTGCCTCTGCTCCTGATAGGAACCTTTGTGGCAG
Seq C2 exon
TCTTTCAGCCAACTCTGACCCAGCCTGACGCGTTCTCAGTCTTCCCAGGCCAAGACGCTCATCTCAGCTGCACCATCAATTCCCAGCATGCCACCGCTGGAGATATTGGGGTGTCGTGGTACCAGCAGCAGCCAGGAAGTGCTCCCCATCTTCTCTACTATTACGCAGAAGAGGAACACTATCGGCCCGCTGACATCCCCGACAGATTCTCAGCTACCGTGGATGCAGCCCACAACGCCTGTATCCTCACCATCAGCCCCGTGCTCCCGGAGGATGATGCCGATTACTTCTGTTCCATCGCCCACACCTTTGAACCCTAGGGCTGGGTTGAACATCTTCTGTCTCCTAGGTCTGCCCCCTGACCTTGGGCCTCCTCTTTTTCTCTTAAGTCTTGCTTTCTTTCCTTCCTCTGTGAAATGAGTTAATAACACTCGACGGGTCAACCACTGTCCTGAGAACTGTGAGATCCTGTGTAAACAAATAAATAAAATAAATGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000903_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0768612=V-set=WD(100=97.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAGTCCCCCAAGTCCCCTT
R:
CAGCTGAGATGAGCGTCTTGG
Band lengths:
251-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types