MmuEX1028209 @ mm10
Exon Skipping
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:161008794-161013021:-
Coord C1 exon
chr1:161012885-161013021
Coord A exon
chr1:161012553-161012595
Coord C2 exon
chr1:161008794-161009491
Length
43 bp
Sequences
Splice sites
3' ss Seq
CACACTTTGTCTTTACATAGGCG
3' ss Score
8.39
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
GTAGCCCTGGCTGTCCTAGAACTCACTACATATACCAAGCTGGAACTCATAGACTTCTGCCTGCCTTTGCCTCCTGAGTGTTGGGATTAAAGGCAAGCTCTACCATGCGCAACAGGGCTTCCCATTTTGAGAGTCAA
Seq A exon
GCGATCCAACACCTGATACTCAGACCAGCCTCTAGTGCCTTTC
Seq C2 exon
CGACACAGTCACACCAGCTGGAGTACGTAGCCACTACCTGAGGGTTAGAGTTCTGCCTGTAGCCTCATCTTGAAGCAGATGCTGATGACATTTGAGAATGACGTGTTTTCTATAAGTCATAGAAGCCCAACTGTAGTGGTTAAGAACCACTCAAAGCAGAGATGCTATGCAGGGAACAAAGCTTAAATGTGTTTCCTCTGGAAGCCACATTACTAAAGAGGTCACAAAAAGTGTACCAAAAGTCCACCTCTGAAATGCAGGTGGCAGGCATATTTAGCATTTATACGGAGTTTCTAGTATTTTTACAAAAATGACTTTAGATCTGGTAATGAGTTTTGTTGTTGTTCTTTAATGAGCCTGTTTTCTTTTTGGAAAAATGGCTCAATAAAAATATCACTAAAGAATTCAATTGTATATGCATGTGCATTAAACACAGAATGGTATACTGAAGATAGTTCACACAAATAATTTTATGGGAAGTTTAGCTATTTTCTTAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467-'21-13,'21-12,22-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCCTCCTGAGTGTTGGG
R:
TGAGGCTACAGGCAGAACTCT
Band lengths:
140-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types