MmuEX1028231 @ mm10
Exon Skipping
Gene
ENSMUSG00000066798 | Zbtb6
Description
zinc finger and BTB domain containing 6 [Source:MGI Symbol;Acc:MGI:2442998]
Coordinates
chr2:37430809-37439605:-
Coord C1 exon
chr2:37439505-37439605
Coord A exon
chr2:37435723-37436253
Coord C2 exon
chr2:37430809-37430979
Length
531 bp
Sequences
Splice sites
3' ss Seq
TTACGCCCTCTCTTACACAGGCA
3' ss Score
9.67
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CCACCCTTCTGAAGGTTACTTCTTTCAGCTAAATTATAAGATTGAAGATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT
Seq A exon
GCAATGATGACATCATCATGACCTCTAAAGATGTCTTTGGGCCTAATATTCGAGGTGTAGACAAAGGCTTACAGTGGCATCACCAGTGCCCAAAGTGTACCAGGGTATTCCGTCACCTGGAGAACTACGCCAACCATTTAAAAATGCACAAACTGTTTATGTGTCTACTCTGCGGCAAGACTTTCACTCAGAAAGGCAATCTTCATCGACACATGCGTGTACATGCCGGAATTAAACCTTTCCAGTGTAAAATCTGTGGGAAAACCTTTTCTCAGAAGTGTTCCTTACAGGACCATCTTAACCTTCACAGTGGAGATAAGCCCCATAAATGTAACTATTGTGACATGGTTTTTGCACATAAGCCAGTTTTGAGGAAACACCTTAAACAGCTGCATGGCAAAAACAGCTTTGATAATGCCAATGAGAGGAGTGTACAAGACCTCACAGTGGATTTTGACTCTTTTGCATGTACAACAGTCACAGACTCTAATTGCCAGCCACAACCTGATGCAACACAGGTCCTGGATGCAG
Seq C2 exon
CGGAAAAAGAGAGGAAGAAAGAGCATCTCAGGATGTTCTTCCGGGGCGTCCAGACAGTCTCCGCGAAGAATAAAGCTGGTTGACTCCGGAAGCGTTTCCTTCCAGGCTAAGTCCATCTTCCGGCCTGGGCTGCCATTGCCGCGGAAGCCTCAAAGCCAGTTTTGCTAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066798-'2-1,'2-0,3-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATATATATGTGTGTGTGTGTGTGTG
R:
CGACTAGCAAAACTGGCTTTGA
Band lengths:
222-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types