MmuEX1028335 @ mm10
Exon Skipping
Gene
ENSMUSG00000039686 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:MGI Symbol;Acc:MGI:2442511]
Coordinates
chr2:30094386-30100416:-
Coord C1 exon
chr2:30100314-30100416
Coord A exon
chr2:30098660-30098843
Coord C2 exon
chr2:30094386-30097934
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCGGTTTTATCCAGCAA
3' ss Score
5.22
5' ss Seq
AATGTTAGT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
CTGACAAGTACTGCCCCCTGCTGATTAAAGAAGGTGGGATGCCCCTGCTGAGAGACTTGATCAAGATGGCAACTGCCCGGCAGGAAACCAAGGAGATGGCCCG
Seq A exon
CAAGGTGATTGAGCACTGCAGTAACTTTAGAGAGGAGAACATGGACACGTCCAGATAGAGGCCACACAGCTCGGACCACAGGCCGGGAGGAAGCGCTGGAGGTCTAGTGGGCAGGTCCCTTTGCGGAGCCTCCTACAGGGTGAAGAAACAGCGAGGACTTGCACAGCCGACGCATTTCCTTAAT
Seq C2 exon
CACCCCAGTGCCCAGGTACTCCCACCAGCAGCAGAGCTGAGCCCACCCGCTGTCCAGAAGATACTACAGCTCCCTCCAAGGCAGGAGGTCCCCACTCCAGCCTCACAGTGGCAGCAGGAAGCCACCTCCAGACCAGCACTTGGACAGTCCTCTGTCCCTCCAGCCCAGTCAGGTTGTCCCTGAGAAGCTGCTGCGCTGTGTGACAGGCAGTAACAGCAAGCTCTCTGGATATCTCCTGCACCCTGTCCTTGTATCTCAGCATTGCTTTTCATTGTTGTAGCTACTGAGGAGACCCATGCACATAAGCAGGCTTTAGGGAGCAAAGCTGGCCCTGGAAGCAGCCTCTGGTGTGGCTTTTTCTGCCCTCTTTCTTCTCTGTGCCCGTTTTTCCGGGCTTGCCTGCCTACAGTCAGAAGGGGCCTGGCTGCTCCCAGAACTCAGGGAGAGGCGACTGATCTTCCCAGAGGAAACTCTCCCTGCCAGGTTGCTTCGCCCATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039686_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.263 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAACCAAGGAGATGGCC
R:
AGCTTGCTGTTACTGCCTGTC
Band lengths:
245-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types