MmuEX1028360 @ mm10
Exon Skipping
Gene
ENSMUSG00000074283 | Zfp109
Description
zinc finger protein 109 [Source:MGI Symbol;Acc:MGI:1929099]
Coordinates
chr7:24227572-24234477:-
Coord C1 exon
chr7:24234351-24234477
Coord A exon
chr7:24230865-24230923
Coord C2 exon
chr7:24227572-24229840
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATATGTGGCCTCTATTTCAGGAT
3' ss Score
9.4
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCAGGGACGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGAACCTCCTGGCAGTGG
Seq A exon
GATCGTGGTTCCCGTAAAATTTTATTCCAGATAAAAGTGCCAATGAAAACAACAACCAG
Seq C2 exon
GAGGCCAAGTTCCAAACAAGATGGAGAACCTTCATACAACAGGAGTAAGATGCCTTTCACTGGGGCAACTTCCATGTGGGCACATGGCAAGCCATGATGCCAACAAGCTGGCCAGAGCTCCAGAAGGGGTAATCAACACTCAAGGAATGGTATCCTACTTCCCAGAGCAATGCCATTTCTCCTGCCACAGGGGACCAGAGGAGCCTCCCTGGGCCTCCAAGGACAATGGCTGTCTTGAGATTCTCACAAATGATCATTCTAGCATTACTGAAAGTCAGAAATTTCTGTCTGGGATTGCTCAGTGTTCTTGGAGTAAAAAACATCTTAGCAAGAGACAGAACTATCAGAAACACTGTGTGCAGACTCCAGTGAAAACCAAGCCACGACGGCTCTTGGCTCCAGGTATTGACAGAATGAGTTGTGTTTCCCATCAAGATAACAATACACTGCATAAAGGAGACAAAGGCCAGAGCAACAGTGACTTTGATAAACTTACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074283_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
ENSMUST00000206362fB19820
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGAGGAAGCTGTACCA
R:
CATGGAAGTTGCCCCAGTGAA
Band lengths:
138-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types