MmuEX1028384 @ mm10
Exon Skipping
Gene
ENSMUSG00000092416 | Zfp141
Description
zinc finger protein 141 [Source:MGI Symbol;Acc:MGI:3584269]
Coordinates
chr7:42490009-42505726:-
Coord C1 exon
chr7:42505610-42505726
Coord A exon
chr7:42501358-42501425
Coord C2 exon
chr7:42490009-42490276
Length
68 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTATCTTTTTATAGATG
3' ss Score
8.33
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TAGTTTCCTGCTCGGACCGCTTGTGCTTGGAGTCTGGACAGTTGGGGTTGTGCATGTCTGCGGGTGGACTTGGTGCCCCACGTGCTTTGTGCCGGGCTCTGTGAGTTGCAGCGTGAG
Seq A exon
ATGTTAAAGTGACACCAAGGAGAGTGATGTTGGTGGATGGAGGCTGGTCATCTACCTTAACAGCAAAG
Seq C2 exon
ACACTAAACAGATGTTTCAAGATGCTGTGCCCTTTACCGATGTCTGAGTTGTCCACACTTCCATCCTGATGTCCTTATGTGGGTGAAGATGATCCCAACCTGGAGCCAACACAGAAAAGCCCATAACCTGTGGTCCTCACCACCTCTACAGCAGTGAAGGTCTCCAGTGTCACCCTGTGGACCCACCACACCCAGCTGAAGAAGGCTCCAGGAGATAACAGAGATGGGTGGTCATCAGGTCCTCCAACTTCCTAAAGATAGGACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092416-'0-8,'0-3,4-8
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGAGTTGCAGCGTGAG
R:
CTGCTGTAGAGGTGGTGAGGA
Band lengths:
175-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types