MmuEX1028397 @ mm10
Exon Skipping
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40192317-40207694:+
Coord C1 exon
chr9:40192317-40192437
Coord A exon
chr9:40202199-40202358
Coord C2 exon
chr9:40207199-40207694
Length
160 bp
Sequences
Splice sites
3' ss Seq
AGCAGGATTCCTTCTTTCAGAAC
3' ss Score
5.84
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AGAGGACCCACGTGTTCCGACCCGCTGGGCCCCGCGCGACTCGGATCCCGCTCGGCTCTTTCGGCCGGGAGTGGGTGGGGGAGCACCGGGCAGGGGAGGAGCCGCCGGAGCCGCGGGAGAC
Seq A exon
AACTCGCAGTGTATGGAACCTTTTGGACATGATGCTCCTTGAAGACCAAGGGAATTTCTAGATGACTTCACTGATCTGGTTCTCAGACATTTAAAATAATAGAGATCTTTTTATTAAGCTAAGTTACCTTGCATAGCAACTCTGTTTATCTGCCTTAAAG
Seq C2 exon
GTCCCTTAGGAGGAACCCCTTGAGCTACCCGGTCTAAAACACGTTATCGCCAGTGTGAGGGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCAACAGCCTTGGAGCCAGAGGACCAAGATCTTTGGGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACGTGCGGGCCAGAATCCGCCTTGGAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAACTTCCGACGCTTTCGATACCAGGAAGCATCAAGCCCTCGAGAAGCTCTCATCAGACTTCGAGAGCTTTGTCATCAGTGGCTGAGGCCAGAGAGGAGAACTAAGGAGCAGATTCTTGAGCTGCTCGTGTTGGAGCAGTTCCTCACTGTCCTGCCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAGCGGCCCGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCCACGTGTTCCGA
R:
AGATCTTGGTCCTCTGGCTCC
Band lengths:
249-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types